Friday, August 15th

First, we'll have a short introduction to using Amazon EC2 today: Intro to Amazon EC2

We'll be working with mothur today. Pat Schloss, the creator and mastermind of mothur, will be our guide.

  • Please see Pat Schloss's Presentation for the course.
  • Please make sure you have the following installed in a single directory that is easy for you to navigate to.

    1. Download and Unpack the correct mothur for your operating system
    2. Example Dataset from Schloss Lab
    3. SILVA-based bacterial reference alignment
    4. mothur-formatted version of the RDP training set (v.9)

    We'll be using data from Pat's MiSeq Standard Operating Procedure



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