Friday, August 15th
First, we'll have a short introduction to using Amazon EC2 today: Intro to Amazon EC2
We'll be working with mothur today. Pat Schloss, the creator and mastermind of mothur, will be our guide.
Please make sure you have the following installed in a single directory that is easy for you to navigate to.
- Download and Unpack the correct mothur for your operating system
- Example Dataset from Schloss Lab
- SILVA-based bacterial reference alignment
- mothur-formatted version of the RDP training set (v.9)
We'll be using data from Pat's MiSeq Standard Operating Procedure
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